The Rainbow Prim Algorithm for Selecting Putative Orthologous Protein Sequences

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RESEARCH ARTICLE

The Rainbow Prim Algorithm for Selecting Putative Orthologous Protein Sequences

The Open Bioinformatics Journal 16 Sep 2008 RESEARCH ARTICLE DOI: 10.2174/1875036200802010060

Abstract

We present a selection method designed for eliminating species redundancy in clusters of putative orthologous sequences, to be applied as a post-processing procedure to pre-clustered data obtained from other methods. The algorithm can always zero-out the cluster redundancy while preserving the number of species of the original cluster