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RESEARCH ARTICLE

The Rainbow Prim Algorithm for Selecting Putative Orthologous Protein Sequences

Anna Rosa Troisi1 Giovanni Aloisio1 Ivan Rossi2 Piero Fariselli2 Fariselli Casadio, * Open Modal , 2 Authors Info & Affiliations
The Open Bioinformatics Journal • 16 Sept 2008 • RESEARCH ARTICLE • DOI: 10.2174/1875036200802010060

Abstract

We present a selection method designed for eliminating species redundancy in clusters of putative orthologous sequences, to be applied as a post-processing procedure to pre-clustered data obtained from other methods. The algorithm can always zero-out the cluster redundancy while preserving the number of species of the original cluster

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