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The Rainbow Prim Algorithm for Selecting Putative Orthologous Protein Sequences
Anna Rosa Troisi1
Giovanni Aloisio1
Ivan Rossi2
Piero Fariselli2
and Fariselli Casadio, *
, 2
Authors Info & Affiliations
, 2
Authors Info & Affiliations
The Open Bioinformatics Journal
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16 Sept 2008 •
RESEARCH ARTICLE
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DOI: 10.2174/1875036200802010060
Abstract
We present a selection method designed for eliminating species redundancy in clusters of putative orthologous sequences, to be applied as a post-processing procedure to pre-clustered data obtained from other methods. The algorithm can always zero-out the cluster redundancy while preserving the number of species of the original cluster
